Retraction
Detection and replication of epistasis influencing transcription in humans
Paper Information
Record ID:
31493
Author(s):
Journal:
Publication Date:
February 26, 2014
Retraction Date:
August 11, 2021
(4.3 years years ago)
Subjects:
Institutions:
- Queensland Brain Institute, University of Queensland, Brisbane, 4072, Queensland, Australia
- University of Queensland Diamantina Institute, University of Queensland, Princess Alexandra Hospital, Brisbane, 4072, Queensland, Australia
- Department of Genetics, University Medical Center Groningen, University of Groningen, Hanzeplein 1, 9700 RB Groningen, The Netherlands
- Estonian Genome Center, University of Tartu, Tartu 51010, Estonia
- Medical and Population Genetics, Broad Institute, Cambridge, 02142, Massachusetts, USA
- Divisions of Endocrinology, Children's Hospital, Boston, 02115, Massachusetts, USA
- Queensland Institute of Medical Research, Brisbane, 4006, Queensland, Australia
- School of Biology and Centre for Integrative Genomics, Georgia Institute of Technology, Atlanta, 30332, Georgia, USA
Countries:
Article Type:
Publisher:
Springer - Nature Publishing Group
Open Access:
Yes
DOI:
PubMed ID:
Retraction PubMed ID:
Retraction Details
Citations (205)
205
Total Citations25
Post-Retraction(12.2%)
179
Pre-Retraction1
Same DayPost-Retraction Citation Analysis
1
Within 30 days
8
Within 1 year
11
After 2+ years
1391
Days since retraction (latest)
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Paper citing Detection and replication of epistasis influencing...
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Performance of deep-learning based approaches to improve polygenic scores
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1 citation
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A scalable adaptive quadratic kernel method for interpretable epistasis analysis in complex traits
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Genome Research
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Discovering non-additive heritability using additive GWAS summary statistics
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eLife
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6 citations
1048 days after retraction
A Scalable Adaptive Quadratic Kernel Method for Interpretable Epistasis Analysis in Complex Traits
Boyang Fu, Prateek Anand, Aakarsh Anand et al. (5 authors)
bioRxiv (Cold Spring Harbor Laboratory)
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943 days after retraction
Paper citing Detection and replication of epistasis influencing...
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Unknown Journal
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918 days after retraction
Factorizing polygenic epistasis improves prediction and uncovers biological pathways in complex traits
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The American Journal of Human Genetics
Open Access
Published: Nov 2023
5 citations
5 citations
812 days after retraction
A biobank-scale test of marginal epistasis reveals genome-wide signals of polygenic epistasis
Boyang Fu, Ali Pazokitoroudi, Albert Xue et al. (7 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Sep 2023
3 citations
3 citations
762 days after retraction
Fast kernel-based association testing of non-linear genetic effects for biobank-scale data
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Nature Communications
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Published: Aug 2023
6 citations
6 citations
734 days after retraction
Parent-offspring genotyped trios unravelling genomic regions with gametic and genotypic epistatic transmission bias on the cattle genome
Samir Id‐Lahoucine, J. Casellas, F. Miglior et al. (5 authors)
Frontiers in Genetics
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Published: Apr 2023
603 days after retraction
A Comparison between Three Tuning Strategies for Gaussian Kernels in the Context of Univariate Genomic Prediction
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Genes
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Published: Dec 2022
3 citations
3 citations
479 days after retraction
Factorizing polygenic epistasis improves prediction and uncovers biological pathways in complex traits
David Shin‐Hsiung Tang, Jerome Freudenberg, Andy Dahl
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Nov 2022
2 citations
2 citations
476 days after retraction
Dissecting Complex Traits Using Omics Data: A Review on the Linear Mixed Models and Their Application in GWAS
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Plants
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7 citations
7 citations
474 days after retraction
Sex-specific Associations in the Hybrid Mouse Diversity Panel help define genetic architecture
Anna Miller, Calvin Pan, Jacquelaine Bartlett et al. (7 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Sep 2022
413 days after retraction
Non-linear machine learning models incorporating SNPs and PRS improve polygenic prediction in diverse human populations
Michael Elgart, Genevieve Lyons, Santiago Romero‐Brufau et al. (23 authors)
Communications Biology
Open Access
Published: Aug 2022
59 citations
59 citations
376 days after retraction
Discovering non-additive heritability using additive GWAS summary statistics
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bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Jul 2022
2 citations
2 citations
345 days after retraction
Concurrent outcomes from multiple approaches of epistasis analysis for human body mass index associated loci provide insights into obesity biology
Sheldon D’Silva, Shreya Chakraborty, Bratati Kahali
Scientific Reports
Open Access
Published: May 2022
12 citations
12 citations
266 days after retraction
Fast Kernel-based Association Testing of non-linear genetic effects for Biobank-scale data
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bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Apr 2022
246 days after retraction
Quantitative trait loci, G×E and G×G for glycemic traits: response to metformin and placebo in the Diabetes Prevention Program (DPP)
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Journal of Human Genetics
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Published: Mar 2022
2 citations
2 citations
210 days after retraction
Detecting gene–gene interactions from GWAS using diffusion kernel principal components
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BMC Bioinformatics
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5 citations
5 citations
174 days after retraction
Reproducing Kernel Hilbert Spaces Regression and Classification Methods
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Springer eBooks
Published: Jan 2022
4 citations
4 citations
143 days after retraction
Interpretable network-guided epistasis detection
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GigaScience
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Published: Jan 2022
9 citations
9 citations
143 days after retraction
Human genetic analyses of organelles highlight the nucleus in age-related trait heritability
Rahul Gupta, Konrad J. Karczewski, Daniel P. Howrigan et al. (5 authors)
eLife
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Published: Sep 2021
23 citations
23 citations
21 days after retraction
Phantom epistasis between unlinked loci
Gibran Hemani, Joseph E. Powell, Huanwei Wang et al. (16 authors)
Nature
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Published: Aug 2021
24 citations
24 citations
Same day as retraction
The genetic architecture of primary biliary cholangitis
Alessio Gerussi, Marco Carbone, Christophe Corpechot et al. (6 authors)
European Journal of Medical Genetics
Published: Jul 2021
25 citations
25 citations
19 days before retraction
Polygenic Risk Prediction using Gradient Boosted Trees Captures Non-Linear Genetic Effects and Allele Interactions in Complex Phenotypes
Michael Elgart, Genevieve Lyons, Santiago Romero‐Brufau et al. (22 authors)
medRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Jul 2021
1 citation
1 citation
26 days before retraction
Atlas of epistasis
Clément Chatelain, Samuel Lessard, Vincent Thuillier et al. (6 authors)
medRxiv (Cold Spring Harbor Laboratory)
Published: Mar 2021
8 citations
8 citations
140 days before retraction
eQTLHap: a tool for comprehensive eQTL analysis considering haplotypic and genotypic effects
Ziad Al Bkhetan, Gursharan Chana, Cheng Soon Ong et al. (5 authors)
Briefings in Bioinformatics
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Published: Mar 2021
161 days before retraction
A guide for kernel generalized regression methods for genomic-enabled prediction
Abelardo Montesinos‐López, Osval A. Montesinos-López, J. Cricelio Montesinos-López et al. (6 authors)
Heredity
Open Access
Published: Mar 2021
23 citations
23 citations
163 days before retraction
Human genetic analyses of organelles highlight the nucleus in age-related trait heritability
Rahul Gupta, Konrad J. Karczewski, Daniel P. Howrigan et al. (5 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Jan 2021
2 citations
2 citations
201 days before retraction
Using C-JAMP to Investigate Epistasis and Pleiotropy
Stefan Konigorski, Benjamin S. Glicksberg
Methods in molecular biology
Published: Jan 2021
222 days before retraction
Protocol for Epistasis Detection with Machine Learning Using GenEpi Package
Olutomilayo Olayemi Petinrin, Ka‐Chun Wong
Methods in molecular biology
Published: Jan 2021
5 citations
5 citations
222 days before retraction
Multi‐tissue transcriptome‐wide association studies
Nastasiya F. Grinberg, Chris Wallace
Genetic Epidemiology
Open Access
Published: Dec 2020
15 citations
15 citations
226 days before retraction
Paper citing Detection and replication of epistasis influencing...
Unknown Authors
Unknown Journal
Published: Oct 2020
286 days before retraction
The Y Chromosome: A Complex Locus for Genetic Analyses of Complex Human Traits
Katherine Parker, A. Mesut Erzurumluoglu, Santiago Rodrı́guez
Genes
Open Access
Published: Oct 2020
18 citations
18 citations
286 days before retraction
Modeling epistasis in mice and yeast using the proportion of two or more distinct genetic backgrounds: Evidence for “polygenic epistasis”
Christoph Rau, Natalia M. Gonzales, Joshua S. Bloom et al. (8 authors)
PLoS Genetics
Open Access
Published: Oct 2020
9 citations
9 citations
289 days before retraction
Network modules linking expression and methylation in prefrontal cortex of schizophrenia
Dongdong Lin, Jiayu Chen, Kuaikuai Duan et al. (7 authors)
Epigenetics
Open Access
Published: Oct 2020
14 citations
14 citations
295 days before retraction
A Novel Mapping Strategy Utilizing Mouse Chromosome Substitution Strains Identifies Multiple Epistatic Interactions That Regulate Complex Traits
Anna Miller, Anlu Chen, Jacquelaine Bartlett et al. (6 authors)
G3 Genes Genomes Genetics
Open Access
Published: Oct 2020
6 citations
6 citations
308 days before retraction
Interpretable network-guided epistasis detection
Diane Duroux, Héctor Climente-González, Chloé‐Agathe Azencott et al. (4 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Sep 2020
3 citations
3 citations
320 days before retraction
Integration of microarray data and literature mining identifies a sex bias in DPP4+CD4+ T cells in HIV-1 infection
Hans Stubbe, Christine Dahlke, Katharina Rotheneder et al. (10 authors)
PLoS ONE
Open Access
Published: Sep 2020
5 citations
5 citations
327 days before retraction
Canalization and Robustness in Human Genetics and Disease
Greg Gibson, Kristine A. Lacek
Annual Review of Genetics
Open Access
Published: Sep 2020
36 citations
36 citations
344 days before retraction
Phantom Epistasis in Genomic Selection: On the Predictive Ability of Epistatic Models
Matías F. Schrauf, Johannes W. R. Martini, Henner Simianer et al. (8 authors)
G3 Genes Genomes Genetics
Open Access
Published: Jul 2020
35 citations
35 citations
382 days before retraction
A novel haplotype-based eQTL approach identifies genetic associations not detected through conventional SNP-based methods
Ziad Al Bkhetan, Gursharan Chana, Cheng Soon Ong et al. (5 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Jul 2020
383 days before retraction
Multi-tissue transcriptome-wide association studies
Nastasiya F. Grinberg, Chris Wallace
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Jul 2020
3 citations
3 citations
393 days before retraction
Association Between FoxO1, A2M, and TGF-β1, Environmental Factors, and Major Depressive Disorder
Mingzhe Zhao, Lu Chen, Zhengxue Qiao et al. (14 authors)
Frontiers in Psychiatry
Open Access
Published: Jul 2020
10 citations
10 citations
397 days before retraction
Changes in gene expression during female reproductive development in a color polymorphic insect
Beatriz Willink, M. Catherine Duryea, Christopher W. Wheat et al. (4 authors)
Evolution
Open Access
Published: May 2020
25 citations
25 citations
455 days before retraction
A novel mapping strategy utilizing mouse chromosome substitution strains identifies multiple epistatic interactions that regulate complex traits
Anna Miller, Anlu Chen, Jacquelaine Bartlett et al. (6 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Apr 2020
2 citations
2 citations
488 days before retraction
Revealing heritability missed by single locus analyses by examining epistasis in mouse chromosome substitution strains
Anna Miller, Anlu Chen, Jacquelaine Bartlett et al. (6 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Apr 2020
1 citation
1 citation
488 days before retraction
Quick Stats
Total Citations:
205
Years Since Retraction:
4.3 years
Open Access:
Yes
Last Checked:
Jul 24, 2025