Retraction
Detection and replication of epistasis influencing transcription in humans
Paper Information
Record ID:
31493
Author(s):
Journal:
Publication Date:
February 26, 2014
Retraction Date:
August 11, 2021
(4.3 years years ago)
Subjects:
Institutions:
- Queensland Brain Institute, University of Queensland, Brisbane, 4072, Queensland, Australia
- University of Queensland Diamantina Institute, University of Queensland, Princess Alexandra Hospital, Brisbane, 4072, Queensland, Australia
- Department of Genetics, University Medical Center Groningen, University of Groningen, Hanzeplein 1, 9700 RB Groningen, The Netherlands
- Estonian Genome Center, University of Tartu, Tartu 51010, Estonia
- Medical and Population Genetics, Broad Institute, Cambridge, 02142, Massachusetts, USA
- Divisions of Endocrinology, Children's Hospital, Boston, 02115, Massachusetts, USA
- Queensland Institute of Medical Research, Brisbane, 4006, Queensland, Australia
- School of Biology and Centre for Integrative Genomics, Georgia Institute of Technology, Atlanta, 30332, Georgia, USA
Countries:
Article Type:
Publisher:
Springer - Nature Publishing Group
Open Access:
Yes
DOI:
PubMed ID:
Retraction PubMed ID:
Retraction Details
Citations (205)
205
Total Citations25
Post-Retraction(12.2%)
179
Pre-Retraction1
Same DayPost-Retraction Citation Analysis
1
Within 30 days
8
Within 1 year
11
After 2+ years
1391
Days since retraction (latest)
Evaluation and application of summary statistic imputation to discover new height-associated loci
Sina Rüeger, Aaron F. McDaid, Zoltán Kutalik
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Oct 2017
1 citation
1 citation
1393 days before retraction
Exhaustive search for epistatic effects on the human methylome
Tobias Egli, Vanja Vukojević, Thierry Sengstag et al. (12 authors)
Scientific Reports
Open Access
Published: Oct 2017
3 citations
3 citations
1395 days before retraction
Quantifying the regulatory effect size of <i>cis</i>-acting genetic variation using allelic fold change
Pejman Mohammadi, Stephane E. Castel, Andrew Brown et al. (4 authors)
Genome Research
Open Access
Published: Oct 2017
152 citations
152 citations
1400 days before retraction
Widespread epistasis regulates glucose homeostasis and gene expression
Anlu Chen, Yang Liu, Scott M. Williams et al. (5 authors)
PLoS Genetics
Open Access
Published: Sep 2017
15 citations
15 citations
1412 days before retraction
Pathway-based discovery of genetic interactions in breast cancer
Wen Wang, Zack Xu, Michael Costanzo et al. (6 authors)
PLoS Genetics
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Published: Sep 2017
68 citations
68 citations
1413 days before retraction
Identifying novel transcription factors involved in the inflammatory response by using binding site motif scanning in genomic regions defined by histone acetylation
Peter S. Askovich, Stephen A. Ramsey, Alan H. Diercks et al. (6 authors)
PLoS ONE
Open Access
Published: Sep 2017
3 citations
3 citations
1423 days before retraction
Discovering genetic interactions bridging pathways in genome-wide association studies
Gang Fang, Wen Wang, Vanja Paunić et al. (15 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Aug 2017
2 citations
2 citations
1442 days before retraction
Genetic Interactions and Complex Human Diseases
Wen Wang
Unknown Journal
Published: Aug 2017
1471 days before retraction
Detecting epistasis with the marginal epistasis test in genetic mapping studies of quantitative traits
Lorin Crawford, Ping Zeng, Sayan Mukherjee et al. (4 authors)
PLoS Genetics
Open Access
Published: Jul 2017
119 citations
119 citations
1477 days before retraction
Epistatic Networks Jointly Influence Phenotypes Related to Metabolic Disease and Gene Expression in Diversity Outbred Mice
Anna L. Tyler, Bo Ji, Daniel M. Gatti et al. (7 authors)
Genetics
Open Access
Published: Jun 2017
59 citations
59 citations
1532 days before retraction
Network approaches to systems biology analysis of complex disease: integrative methods for multi-omics data
Jingwen Yan, Shannon L. Risacher, Li Shen et al. (4 authors)
Briefings in Bioinformatics
Open Access
Published: May 2017
295 citations
295 citations
1534 days before retraction
Functional regression method for whole genome eQTL epistasis analysis with sequencing data
Kelin Xu, Jin Li, Momiao Xiong
BMC Genomics
Open Access
Published: May 2017
3 citations
3 citations
1546 days before retraction
Modeling of a negative feedback mechanism explains antagonistic pleiotropy in reproduction in domesticated Caenorhabditis elegans strains
Edward Large, Raghavendra Padmanabhan, Kathie L. Watkins et al. (6 authors)
PLoS Genetics
Open Access
Published: May 2017
25 citations
25 citations
1553 days before retraction
Widespread Allelic Heterogeneity in Complex Traits
Farhad Hormozdiari, Anthony Zhu, Gleb Kichaev et al. (11 authors)
The American Journal of Human Genetics
Open Access
Published: May 2017
91 citations
91 citations
1563 days before retraction
Widespread Inter-Chromosomal Epistasis Regulates Glucose Homeostasis and Gene Expression
Anlu Chen, Yang Liu, Scott M. Williams et al. (5 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: May 2017
1 citation
1 citation
1563 days before retraction
Functional Architectures of Local and Distal Regulation of Gene Expression in Multiple Human Tissues
Xuanyao Liu, Hilary K. Finucane, Alexander Gusev et al. (11 authors)
The American Journal of Human Genetics
Open Access
Published: Mar 2017
90 citations
90 citations
1602 days before retraction
Enhanced methods to detect haplotypic effects on gene expression
Robert Brown, Gleb Kichaev, Nicholas Mancuso et al. (5 authors)
Bioinformatics
Open Access
Published: Mar 2017
6 citations
6 citations
1605 days before retraction
Screening for interaction effects in gene expression data
Peter J. Castaldi, Michael H. Cho, Liming Liang et al. (7 authors)
PLoS ONE
Open Access
Published: Mar 2017
6 citations
6 citations
1609 days before retraction
Interactions within the MHC contribute to the genetic architecture of celiac disease
Benjamin Goudey, Gad Abraham, Eder Kikianty et al. (10 authors)
PLoS ONE
Open Access
Published: Mar 2017
16 citations
16 citations
1615 days before retraction
Modeling of a negative feedback mechanism explains age-dependent genetic architecture in reproduction in domesticated<i>C. elegans</i>strains
Edward Large, Raghavendra Padmanabhan, Kathie L. Watkins et al. (6 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Mar 2017
1 citation
1 citation
1619 days before retraction
Epistasis in Neuropsychiatric Disorders
Caleb Webber
Trends in Genetics
Published: Mar 2017
27 citations
27 citations
1619 days before retraction
High‐Throughput Assays to Assess the Functional Impact of Genetic Variants: A Road Towards Genomic‐Driven Medicine
Joseph Ipe, Marelize Swart, KS Burgess et al. (4 authors)
Clinical and Translational Science
Open Access
Published: Feb 2017
42 citations
42 citations
1635 days before retraction
Epistatic networks jointly influence phenotypes related to metabolic disease and gene expression in Diversity Outbred mice
Anna L. Tyler, Bo Ji, Daniel M. Gatti et al. (7 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Jan 2017
1 citation
1 citation
1679 days before retraction
Coronary Artery Disease and Myocardial Infarction
Themistocles L. Assimes
Elsevier eBooks
Published: Jan 2017
1683 days before retraction
Accelerating FaST-LMM for Epistasis Tests
Héctor Martínez, Sergio Barrachina, Maribel Castillo et al. (7 authors)
Lecture notes in computer science
Published: Jan 2017
4 citations
4 citations
1683 days before retraction
Genome‐wide survey in African Americans demonstrates potential epistasis of fitness in the human genome
Heming Wang, Yoonha Choi, Bamidele O. Tayo et al. (13 authors)
Genetic Epidemiology
Open Access
Published: Dec 2016
13 citations
13 citations
1710 days before retraction
Epistasis detection using a permutation-based Gradient Boosting Machine
Kai Che, Xiaoyan Liu, Maozu Guo et al. (6 authors)
2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
Published: Dec 2016
5 citations
5 citations
1714 days before retraction
Local Adaptation of Sun-Exposure-Dependent Gene Expression Regulation in Human Skin
Ryosuke Kita, Hunter B. Fraser
PLoS Genetics
Open Access
Published: Oct 2016
42 citations
42 citations
1757 days before retraction
Examination of previously identified associations within the Genetic Analysis Workshop 19 data
Richard Howey, Jakris Eu‐ahsunthornwattana, Rebecca Darlay et al. (4 authors)
BMC Proceedings
Open Access
Published: Oct 2016
1 citation
1 citation
1775 days before retraction
Quantifying the regulatory effect size of cis-acting genetic variation using allelic fold change
Pejman Mohammadi, Stephane E. Castel, Andrew Brown et al. (4 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Sep 2016
16 citations
16 citations
1776 days before retraction
Widespread allelic heterogeneity in complex traits
Farhad Hormozdiari, Anthony Zhu, Gleb Kichaev et al. (11 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Sep 2016
5 citations
5 citations
1784 days before retraction
Epistasis and destabilizing mutations shape gene expression variability in humans via distinct modes of action
Ence Yang, Gang Wang, Jizhou Yang et al. (6 authors)
Human Molecular Genetics
Open Access
Published: Sep 2016
5 citations
5 citations
1786 days before retraction
Modeling disease risk through analysis of physical interactions between genetic variants within chromatin regulatory circuitry
Olivia Corradin, Andrea J. Cohen, Jennifer M. Luppino et al. (6 authors)
Nature Genetics
Open Access
Published: Sep 2016
64 citations
64 citations
1787 days before retraction
Are Interactions between cis-Regulatory Variants Evidence for Biological Epistasis or Statistical Artifacts?
Alexandra E. Fish, John A. Capra, William S. Bush
The American Journal of Human Genetics
Open Access
Published: Sep 2016
41 citations
41 citations
1790 days before retraction
Genotype distribution-based inference of collective effects in genome-wide association studies: insights to age-related macular degeneration disease mechanism
Hyung Jun Woo, Chenggang Yu, Kamal Kumar et al. (5 authors)
BMC Genomics
Open Access
Published: Aug 2016
15 citations
15 citations
1807 days before retraction
A meta-analytic framework for detection of genetic interactions
Yulun Liu, Yong Chen, Paul Scheet
Genetic Epidemiology
Open Access
Published: Aug 2016
2 citations
2 citations
1822 days before retraction
Detecting Epistasis with the Marginal Epistasis Test in Genetic Mapping Studies of Quantitative Traits
Lorin Crawford, Ping Zeng, Sayan Mukherjee et al. (4 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Jul 2016
5 citations
5 citations
1837 days before retraction
Detecting Epistasis in Genome-wide Association Studies with the Marginal EPIstasis Test
Lorin Crawford, Sayan Mukherjee, Xiang Zhou
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Jul 2016
1 citation
1 citation
1837 days before retraction
A global test for gene‐gene interactions based on random matrix theory
H. Robert Frost, Christopher I. Amos, Jason H. Moore
Genetic Epidemiology
Open Access
Published: Jul 2016
8 citations
8 citations
1861 days before retraction
Embracing Complex Associations in Common Traits: Critical Considerations for Precision Medicine
Molly A. Hall, Jason H. Moore, Marylyn D. Ritchie
Trends in Genetics
Published: Jul 2016
29 citations
29 citations
1862 days before retraction
Genotypic Context and Epistasis in Individuals and Populations
Timothy B. Sackton, Daniel L. Hartl
Cell
Open Access
Published: Jul 2016
144 citations
144 citations
1867 days before retraction
Exhaustive Genome-Wide Search for SNP-SNP Interactions Across 10 Human Diseases
William Murk, Andrew T. DeWan
G3 Genes Genomes Genetics
Open Access
Published: Jul 2016
17 citations
17 citations
1867 days before retraction
Multikernel linear mixed models for complex phenotype prediction
Omer Weissbrod, Dan Geiger, Saharon Rosset
Genome Research
Open Access
Published: Jun 2016
50 citations
50 citations
1884 days before retraction
Survival of the Curviest: Noise-Driven Selection for Synergistic Epistasis
Jon F. Wilkins, Peter McHale, Joshua Gervin et al. (4 authors)
PLoS Genetics
Open Access
Published: Apr 2016
5 citations
5 citations
1931 days before retraction
POEM: Identifying Joint Additive Effects on Regulatory Circuits
Maya Botzman, Aharon Nachshon, Avital Brodt et al. (4 authors)
Frontiers in Genetics
Open Access
Published: Apr 2016
1 citation
1 citation
1940 days before retraction
Functional partitioning of local and distal gene expression regulation in multiple human tissues
Xuanyao Liu, Hilary K. Finucane, Alexander Gusev et al. (11 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Mar 2016
3 citations
3 citations
1959 days before retraction
Weak Epistasis Generally Stabilizes Phenotypes in a Mouse Intercross
Anna L. Tyler, Leah Rae Donahue, Gary A. Churchill et al. (4 authors)
PLoS Genetics
Open Access
Published: Feb 2016
42 citations
42 citations
2018 days before retraction
An Ancestry Based Approach for Detecting Interactions
Danny S. Park, Itamar Eskin, Eun Yong Kang et al. (13 authors)
bioRxiv (Cold Spring Harbor Laboratory)
Open Access
Published: Jan 2016
2037 days before retraction
Translating Lung Function Genome-Wide Association Study (GWAS) Findings
Abdul Kader Kheirallah, S. Miller, Ian P. Hall et al. (4 authors)
Advances in genetics
Published: Jan 2016
17 citations
17 citations
2049 days before retraction
Detection of Regulator Genes and eQTLs in Gene Networks
Lingfei Wang, Tom Michoel
Springer eBooks
Published: Jan 2016
4 citations
4 citations
2049 days before retraction
Quick Stats
Total Citations:
205
Years Since Retraction:
4.3 years
Open Access:
Yes
Last Checked:
Jul 24, 2025