Expression of concern

Organoid-based Models to Study the Role of Host-microbiota Interactions in IBD

Expression of concern Details

Nature of Retraction:

Expression of concern

Retraction Notice:
10.1093/ecco-jcc/jjab227
Additional Notes:

See also: https://doi.org/10.1093/ecco-jcc/jjab225 Journal was previously published by Elsevier until 2015.

Citations (65)

65
Total Citations
58
Post-Retraction
(89.2%)
6
Pre-Retraction
1
Same Day
Post-Retraction Citation Analysis
1 Within 30 days
16 Within 1 year
25 After 2+ years
1258 Days since retraction (latest)
Models for Studying Fungal Pathogenesis
Aaron Curtis, Fathia Oladimeji, Kevin Kavanagh
Current Clinical Microbiology Reports Open Access
Published: Jul 2025
1258 days after retraction
Assessing the safety of microbiome perturbations
Aline Métris, Alan W. Walker, Alicia Showering et al. (23 authors)
Microbial Genomics Open Access
Published: May 2025
1 citation
1207 days after retraction
Engineered Tissue Models to Decode Host–Microbiota Interactions
Miryam Adelfio, G. E. Callen, Xuesong He et al. (6 authors)
Advanced Science Open Access
Published: May 2025
1206 days after retraction
Engineering artificial microbial consortia for personalized gut microbiome modulation and disease treatment
Timoth Mkilima
Annals of the New York Academy of Sciences
Published: May 2025
1197 days after retraction
Gut microbiome predictors of advanced therapy response in Crohn’s disease: protocol for the OPTIMIST prospective, longitudinal, observational pilot study in Canada
Cristian Aldo Massaro, Susanna Meade, Fanny Laure Lemarié et al. (9 authors)
BMJ Open Open Access
Published: Mar 2025
1 citation
1132 days after retraction
Real-time monitoring of virus infection dynamics in established infection models for mechanism analysis
Shu‐Jun Liu, Wenfeng Xu, Pengfei Jin et al. (4 authors)
Chinese Chemical Letters
Published: Mar 2025
1132 days after retraction
Model systems to study tumor-microbiome interactions in early-onset colorectal cancer
Katharina Maria Richter, Marius Wrage, Carolin Krekeler et al. (7 authors)
EMBO Molecular Medicine Open Access
Published: Feb 2025
1116 days after retraction
Microbiome Experimentation 2.0
Jagriti Ramanathan
Unknown Journal
Published: Jan 2025
1073 days after retraction
Overview of preclinical research
Kristyn Gumpper, Zobeida Cruz‐Monserrate
Elsevier eBooks
Published: Jan 2025
1073 days after retraction
Dietary Carrageenan Amplifies the Inflammatory Profile, but not Permeability, of Intestinal Epithelial Cells from Patients With Crohn’s Disease
Eva Vissers, Judith Wellens, Lorenzo Giorio et al. (10 authors)
Inflammatory Bowel Diseases Open Access
Published: Dec 2024
1 citation
1065 days after retraction
Modeling cancer–microbiome interactions in vitro: A guide to co‐culture platforms
Kristin Moskal, Nimisha Khurana, Luisa Siegert et al. (7 authors)
International Journal of Cancer Open Access
Published: Dec 2024
2 citations
1064 days after retraction
The Key Nutrients in the Mediterranean Diet and Their Effects in Inflammatory Bowel Disease: A Narrative Review
S Deleu, Guia Becherucci, Lihi Godny et al. (6 authors)
Nutrients Open Access
Published: Dec 2024
5 citations
1046 days after retraction
Gut microbiota in health and disease: advances and future prospects
Yusheng Zhang, Hong Wang, Yingpeng Sang et al. (7 authors)
MedComm Open Access
Published: Nov 2024
14 citations
1031 days after retraction
Upgrading In Vitro Digestion Protocols with Absorption Models
Otília Antal, István Dalmadi, Krisztina Takács
Applied Sciences Open Access
Published: Sep 2024
3 citations
965 days after retraction
Review of New Approach Methodologies for Application in Risk Assessment of Nanoparticles in the Food and Feed Sector: Status and Challenges
Shirin M. Usmani, Susanne Bremer‐Hoffmann, Karlien Cheyns et al. (26 authors)
EFSA Supporting Publications Open Access
Published: Sep 2024
9 citations
951 days after retraction
Integrating multi-omics to unravel host-microbiome interactions in inflammatory bowel disease
Yiran Zhang, John P. Thomas, Tamás Korcsmáros et al. (4 authors)
Cell Reports Medicine Open Access
Published: Sep 2024
17 citations
951 days after retraction
Intestinal organ chips for disease modelling and personalized medicine
Aliçan Özkan, Nina LoGrande, Jéssica F. Feitor et al. (5 authors)
Nature Reviews Gastroenterology & Hepatology
Published: Aug 2024
12 citations
946 days after retraction
FGL2 improves experimental colitis related to gut microbiota structure and bile acid metabolism by regulating macrophage autophagy and apoptosis
Yuan Zhao, Zheng Xiang, Haoran Pan et al. (6 authors)
Heliyon Open Access
Published: Jul 2024
1 citation
889 days after retraction
Challenges in IBD Research 2024: Preclinical Human IBD Mechanisms
Matthew A. Ciorba, Liza Konnikova, Simon A. Hirota et al. (16 authors)
Inflammatory Bowel Diseases Open Access
Published: May 2024
9 citations
828 days after retraction
[Application and Research Progress of Lung Cancer Organoid in Precision Medicine 
for Lung Cancer].
Zhicheng Huang, Bowen Li, Yadong Wang et al. (7 authors)
PubMed
Published: Apr 2024
817 days after retraction
Unveiling the microbial symphony: Next-Gen sequencing and bioinformatics insights into the human gut microbiome
Keerti Maheshwari, Pankaj Musyuni, Amitava Moulick et al. (7 authors)
Health Sciences Review Open Access
Published: Apr 2024
2 citations
801 days after retraction
The roles of ABCB1/P-glycoprotein drug transporters in regulating gut microbes and inflammation: insights from animal models, old and new
Lauren Stoeltje, Jenna K. Luc, Timothaus Haddad et al. (4 authors)
Philosophical Transactions of the Royal Society B Biological Sciences Open Access
Published: Mar 2024
8 citations
784 days after retraction
Notoginsenoside R1 promotes Lgr5+ stem cell and epithelium renovation in colitis mice via activating Wnt/β-Catenin signaling
Zhilun Yu, Ruiyang Gao, Cheng Lv et al. (15 authors)
Acta Pharmacologica Sinica Open Access
Published: Mar 2024
15 citations
781 days after retraction
Synthetic Colonic Mucus Enables the Development of Modular Microbiome Organoids
Michael A. Miller, Scott H. Medina
Advanced Functional Materials Open Access
Published: Mar 2024
5 citations
779 days after retraction
Revolutionizing immune research with organoid-based co-culture and chip systems
Diana Papp, Tamás Korcsmáros, Isabelle Hautefort
Clinical & Experimental Immunology Open Access
Published: Jan 2024
18 citations
733 days after retraction
Double-Barrel Perfusion System for Modification of Luminal Contents of Intestinal Organoids
Nicholas J. Ginga, Raleigh Slyman
Methods in molecular biology
Published: Jan 2024
707 days after retraction
Enhancing pre-clinical research with simplified intestinal cell line models
Christina Fey, Theresa Truschel, Kristina Nehlsen et al. (9 authors)
Journal of Tissue Engineering Open Access
Published: Jan 2024
2 citations
707 days after retraction
In vitro and in vivo experimental models for cancer immunotherapy study
Chunye Zhang, Yuxiang Sui, Shuai Liu et al. (4 authors)
Current Research in Biotechnology Open Access
Published: Jan 2024
5 citations
707 days after retraction
Experimental Modeling of Host–Bacterial Interactions in Head and Neck Squamous Cell Carcinoma
Ogoegbunam Okolo, Emily Honzel, William Britton et al. (8 authors)
Cancers Open Access
Published: Dec 2023
687 days after retraction
Engineered Human Organoids for Biomedical Applications
Yujuan Zhu, Lingyu Sun, Xiangyi Wu et al. (5 authors)
Advanced Functional Materials
Published: Nov 2023
13 citations
675 days after retraction
Culturing the unculturables: strategies, challenges, and opportunities for gut microbiome study
Asha Yadav, Shruti Ahlawat, Krishna Kant Sharma
Journal of Applied Microbiology Open Access
Published: Nov 2023
9 citations
669 days after retraction
Modelling host–microbiome interactions in organ-on-a-chip platforms
Yong Cheol Shin, Nam Than, So‐Youn Min et al. (5 authors)
Nature Reviews Bioengineering
Published: Nov 2023
25 citations
662 days after retraction
Usage of Cultured Human Fecal Microbiota for Colonization of Caenorhabditis elegans to Study Host–Microbe Interaction
Katrine Vogt Møller, Jonas Bruhn Wesseltoft, Richelle Malazarte et al. (7 authors)
Applied Microbiology Open Access
Published: Sep 2023
2 citations
612 days after retraction
Advanced Technologies for Studying Microbiome–Female Reproductive Tract Interactions: Organoids, Organoids-on-a-Chip, and Beyond
Yosun A. Kaya, Marcel R. de Zoete, Gaby S. Steba
Seminars in Reproductive Medicine Open Access
Published: Sep 2023
2 citations
585 days after retraction
Synthetic Colonic Mucus Enables the Development of Modular Microbiome Organoids
Scott H. Medina, Michael A. Miller
Research Square (Research Square) Open Access
Published: Aug 2023
1 citation
556 days after retraction
Patient-derived organoids of lung cancer based on organoids-on-a-chip: enhancing clinical and translational applications
Xiaoyun Zeng, Qiong Ma, Xueke Li et al. (8 authors)
Frontiers in Bioengineering and Biotechnology Open Access
Published: May 2023
14 citations
487 days after retraction
Microengineered organoids: reconstituting organ-level functions <i>in vitro</i>
Sunho Park, Harshita Sharma, Woochan Kim et al. (7 authors)
Organoid Open Access
Published: Apr 2023
1 citation
456 days after retraction
Microbiota-directed biotherapeutics: considerations for quality and functional assessment
Emily E.F. Fekete, Daniel Figeys, Xu Zhang
Gut Microbes Open Access
Published: Mar 2023
19 citations
410 days after retraction
Comprehensive protocols for culturing and molecular biological analysis of IBD patient-derived colon epithelial organoids
Shreya Gopalakrishnan, Ingunn Bakke, Marianne Doré Hansen et al. (7 authors)
Frontiers in Immunology Open Access
Published: Feb 2023
6 citations
395 days after retraction
Understanding disruption of the gut barrier during inflammation: Should we abandon traditional epithelial cell lines and switch to intestinal organoids?
Susana Lechuga, Manuel B. Braga Neto, Nayden G. Naydenov et al. (5 authors)
Frontiers in Immunology Open Access
Published: Feb 2023
41 citations
388 days after retraction
The small intestinal microbiome: vibing with intestinal stem cells
Victoria Poplaski, Faith Sawyer, Sarah E. Blutt
Microbiota and Host Open Access
Published: Feb 2023
373 days after retraction
Atractylodin and β-eudesmol from Atractylodes lancea (Thunb.) DC. Inhibit Cholangiocarcinoma Cell Proliferation by Downregulating the Notch Signaling Pathway
Peeranate Vanaroj, Wanna Chai่jaroenkul, Kesara Na‐Bangchang
Asian Pacific Journal of Cancer Prevention Open Access
Published: Feb 2023
9 citations
373 days after retraction
Therapeutic Potential of Bioactive Components from Scutellaria baicalensis Georgi in Inflammatory Bowel Disease and Colorectal Cancer: A Review
Jung Yoon Jang, Eunok Im, Nam Deuk Kim
International Journal of Molecular Sciences Open Access
Published: Jan 2023
36 citations
360 days after retraction
Necrotizing enterocolitis: Bench to bedside approaches and advancing our understanding of disease pathogenesis
Dhirendra Kumar Singh, Claire Miller, Kelly Orgel et al. (6 authors)
Frontiers in Pediatrics Open Access
Published: Jan 2023
32 citations
352 days after retraction
Pathogenesis: Crohn’s disease and ulcerative colitis
Beatriz Elias Ribeiro, Joana Breves, Heitor Siffert Pereira de Souza
Elsevier eBooks
Published: Jan 2023
342 days after retraction
High Acetate Concentration Protects Intestinal Barrier and Exerts Anti-Inflammatory Effects in Organoid-Derived Epithelial Monolayer Cultures from Patients with Ulcerative Colitis
S Deleu, Kaline Arnauts, Lowie Deprez et al. (9 authors)
International Journal of Molecular Sciences Open Access
Published: Jan 2023
55 citations
342 days after retraction
Application of organoids-on-a-chip based on microfluidic technology in precision medicine of lung cancer
Xiaoyun Zeng, Qiong Ma, Xueke Li et al. (8 authors)
Chinese Science Bulletin (Chinese Version)
Published: Dec 2022
311 days after retraction
Organotypic cultures as aging associated disease models
Martina M. Sanchez, Isabella A. Bagdasarian, William Darch et al. (4 authors)
Aging Open Access
Published: Nov 2022
8 citations
302 days after retraction
Intestinal organoids as advanced modeling platforms to study the role of host-microbiome interaction in homeostasis and disease
Ji‐Su Ahn, Min‐Jung Kang, Yoojin Seo et al. (4 authors)
BMB Reports Open Access
Published: Nov 2022
10 citations
294 days after retraction
In vitro models to study Clostridioides difficile infection: current systems and future advances
Duncan Ewin, William Davis Birch, Inês B. Moura
Current Opinion in Gastroenterology Open Access
Published: Nov 2022
7 citations
283 days after retraction
Quick Stats
Total Citations: 65
Years Since Retraction: 3.8 years
Open Access: Yes
Last Checked: Jul 24, 2025
Related Papers
Third European Evidence-based Consensus on Diagnosis and Ma…
Journal of Crohn's and Colitis • 1718 citations
Second European evidence-based consensus on the diagnosis a…
Journal of Crohn's and Colitis • 1561 citations
Third European Evidence-based Consensus on Diagnosis and Ma…
Journal of Crohn's and Colitis • 1086 citations
3rd European Evidence-based Consensus on the Diagnosis and …
Journal of Crohn's and Colitis • 703 citations
Second European evidence-based consensus on the diagnosis a…
Journal of Crohn's and Colitis • 475 citations